Ok, for all those wanting software to organinze your campaign/thoughts the software you are looking for is called "The Brain".
http://www.thebrain.com/
The problem I have with most systems is I'm always changing the ways I want to store my information. In different formats, different programs. To link all these together in some sort of accessible fassion is the real trick.
The Brain is sort of like a personal web sever for your computer, but unlike a web server it is much more intuitive to navigate. Basically every link is organized into thoughts. Each thought can be a note, a word document, a image, powerpoint presentation, a text file, pdf, etc... You can link to any file located anywhere on your system, intranet or network pretty much regardless of the format. And each thought can be related to other thoughts. Thus you can create independant campaigns, encounters or adventures, and then link them as needed.
Like said above, I try not to tie my adventures together in any linear fashion, thus when the PC move from one area to another you can quickly navigate to the desired information.
Check it out.
PS: It also has a cool interface.
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