Having played Pathfinder for some time now, and having used EOM in both 3.5 and Pathfinder, I think the spell lists themselves do not require any changing. One thing that could be changed would be the classes included as part of the EOM and Lyceian Arcana books. With the inclusion of Sorcerer bloodlines and Wizard schools, the EOM classes feel slightly underpowered.
I will admit that the traditions help, but some additional re-balancing would be nice.