WaterRabbit
Explorer
My idea? I think it actually increases the likelihood of such characters - provided of course you do the stat capping after everything else has been determined.
No system can cover every concept well. I think the half-elf raised by orcs is a great place for you and the DM to get together and agree on a houserule regarding that PC. It's such a minor exception I wouldn't expect that to be core in any system.
You have never played the Hero system then, which did model this very well. Pathfinder allows racial customization that allows characters to swap race feats with replacements. It is not a minor exception as it is brought up all of the time.