My house rules document is currently a 80 page word file (including table of contents), which I would love to post but it doesnt just contain our tweaking or adjusted rules, it also includes new material, tweaked material from existing sources and a heap of material written up from many dragon mags for easy reference in one place (and save me lugging a box of issues around with me to every game).
But to give you an idea, below is the table of contents

Anything without a reference in Parentheses after it is from Dragon Magazine.
GENERAL: 7
Campaign Basics 7
STATISITCS: 7
Campaign Limit for New Characters 7
RACES: 7
Races of Faerun: 7
Mythic Races: 7
The Underdark: 7
Unapproachable East: 7
CHANGELING: 8
DAYWALKER: (FANG & FURY) 9
HALF NYMPH: 11
NELANTHAN MINOTAUR: (DLA, MODIFIED) 12
WARFORGED: (EBERRON) 14
WOODLAND SPRITE: (NEW) 16
CLASSES: 18
Sorcerers 18
Wizards 18
NOBLE: (NEW CLASS) 18
SKILLS: 20
FEATS: 21
GENERAL FEATS 21
Enspell Familiar 21
Extra Familiar 21
Construct Familiar 21
Token Familiar 21
Undead Familiar 21
Planar Familiar (NEW) 21
Danger Sense 21
Kick Them While They’re Down 21
Singing Blade Style 21
Snatch Weapon 22
Dirty Fighting 22
Double Team 22
Dual Strike 22
Improved Dirty Fighting 22
Signature Move (NEW) 22
Staggering Blow 22
Poison Specialisation 22
Master of Arms 22
Telling Blow 22
Good Manners 22
Good Neighbour 23
Hometown Advantage 23
Line of Credit 23
God Touched 23
Seer (NEW) 23
Double Weapon Disarm 23
Mighty Are Fallen 23
Shield Snare 23
Improved Shield Snare 23
Noble House (Nobles Handbook) 24
Alternate Identity 24
Noble Bloodline (Nobles Handbook) 24
Exceptional Leadership 24
Unique Spell (Arcana Unearthed) 24
Signature Spell (Arcana Unearthed) 24
Natural Archer (Arcana Unearthed) 24
Natural Swordsman (Arcana Unearthed) 24
Eidetic Memory (Arcana Unearthed) 25
METAMAGIC FEATS 25
Taint Spell (NEW) 25
Holy Spell (NEW) 25
BLOODLINE FEATS (for sorcerers only) 25
Air Bloodline 25
Arcane Kinship 25
Celestial Bloodline 25
Celestial Light 26
Draconic Bloodline 26
Dragon Sight 26
Earth Bloodline 26
Fey Bloodline 26
Fey’s Fate 27
Fiendish Bloodline 27
Fire Bloodline 27
Fire Feet 28
Friend of the Earth 28
Kin Mastery 28
Power in the Blood 28
Voice of Winds 28
Water Bloodline 28
Waterborn 28
FERAL FEATS (Intended for lycanthropes) 28
Crushing Hug 28
Gore Toss 29
Hamstring Attack 29
Hibernate 29
Moonwarrior 29
Pack Feint 29
Pack Tactics 29
Quick Change 29
Spirit of the Beast 29
Sprinter 29
MONSTER FEATS (not typically for PCs) 29
Spit Venom 29
Strong Coils 30
WARFORGED FEATS 30
Adamantine-Laced body (Eberron) 30
Improved Damage Reduction (Eberron) 30
Improved Fortification (Eberron) 30
Mithral-Laced Body (Eberron) 30
Mithral-Fluidity (Eberron) 30
VAMPIRE FEATS 30
Animal Feeder (Fang & Fury) 30
Conceal Taint (Fang & Fury) 30
Create Darkness (Fang & Fury) 30
Curse Water (Fang & Fury) 30
Devil’s Tongue (Fang & Fury) 31
Drain Joints (Fang & Fury) 31
Empowered Natural Weapon (Fang & Fury) 31
Energy Drain (Fang & Fury) 31
Forgettable (Fang & Fury) 31
Hypnotic Voice (Fang & Fury) 31
Improved Blood Drain (Fang & Fury) 31
Improved Natural Weapon (Fang & Fury) 31
Improved Turn Resistance (Fang & Fury) 32
Infamy (Fang & Fury) 32
Lifemask (Fang & Fury) 32
Selective Feeder (Fang & Fury) 32
Sense Alignment (Fang & Fury) 32
Sense Invisibility (Fang & Fury) 32
Shadowcaster (Fang & Fury) 32
Shadow Servant (Fang & Fury) 32
Spider Climb (Fang & Fury) 32
True Seeing (Fang & Fury) 32
Unnatural Aura (Fang & Fury) 32
PRESTIGE CLASSES: 34
Battlepriest Of Cormyr: 34
Council Mage Of Cormyr: (EXPANDED) 35
Noble Adventurer Of Cormyr: (EXPANDED) 37
Moon Drover Of Cormyr: (EXPANDED) 38
Royal Scout Of Cormyr: (REVISED) 39
Councillor of the Tree’s: (NEW) 41
Elven Knight of Evermeet: (NEW) 43
Agent of the Sad Queen: (NEW) 45
Elven Windrider: (NEW) 47
Ancestral Avenger of the Elven Court (REVISED) 47
White Horn of Lurue (RETHEMED) 48
Shadovar Emissary: (NEW) 50
Warforged Paragon: (NEW) 52
Aasimar Paragon: (NEW) 52
Changeling Paragon: (NEW) 54
Half Nymph Paragon: (NEW) 54
Daywalker Paragon: (NEW) 55
Minotaur Paragon: (NEW) 56
APPROVED SOURCEBOOKS: 57
UA APPROVED CONTENT: 57
Racial Paragon Classes: 57
Variant Classes: 57
Prestige Classes: 57
Traits: 57
Character Flaws: 57
Spell touched Feats: 57
Armour as Damage Reduction: 57
Light Armour 57
Medium Armour 57
Heavy Armour 57
Individualised Summoning Lists: 57
SPELLFIRE RULES: (NEW) 58
FAMILIAR PATHS: (EA FAMILIARS) 59
The Traditional Path 59
Path of the Assistant 60
Path of the Envoy 61
Path of the Guardian 62
Path of the Gladiator 63
Path of the Infiltrator 64
Path of the Seeker 65
NOBLE HOUSES: (NOBLES HANDBOOK, MODIFIED) 67
Establishment 67
Taking Over 67
Leading a Noble House 67
The Treasury & Material Aid 67
Taking Care of Followers 67
Determining Noble House Members 67
House Strength Rating 69
Increasing Strength Rating 69
Raising House Strength 69
Decreasing House Strength 70
House Strength Effects Table 70
Noble House Effects 70
Family Ties 70
Influence 70
Adversary 70
Skill Focus 70
Manor 70
Gossip Network 71
Seneschal 71
Land 71
In the Know 71
Bonus Feat 71
Estate 71
Political Favours 71
NEW SPELLS: 72
Blood Burst (Fang & Fury) 72
Blood Messenger (Fang & Fury) 72
Repair Critical Damage 72
Repair Critical Damage, Mass 72
Repair Light Damage 72
Repair Light Damage, Mass 72
Repair Minor Damage 72
Repair Moderate Damage 72
Repair Moderate Damage, Mass 72
Repair Serious Damage 72
Repair Serious Damage, Mass 73
NEW MONSTERS: 74
Elder Serpent 74
Creator Race 75
Vampire Scion: (Fang & Fury) 76
Blood Puppet: (Fang & Fury) 77
Moonhorse: (Redone for 3.5) 77
NEW MAGIC ITEMS: 79
Wizard’s Staff (NEW) 79
Scabbard of Enchanting (NEW) 79
Ever Glowing Stone (NEW) 79
NEW MATERIAL 79
Silverwood (NEW) 79