Quoting the same rules passage you posted upthread:
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A Clear Path to the Target
To target something, you must have a clear path to it, so it can’t be behind
total cover.
If you place an area of effect
at a point that you can’t see and an obstruction, such as a wall, is between you and that point, the point of origin comes into being on the near side of that obstruction.
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The bolded clause (emphasis mine) affects the entire rest of the sentence. If you can see the target point,
all the rest doesn't apply.
Take out that bolded clause and it works exactly the way you seem to think it does. Leave that clause in, and you can affect something behind a transparent obstruction unless something physical has to pass through said obstruction.
As is, it's either a) very poorly worded or b) the intent really is that you can cast some spells through glass or a WoF.