Poul Anderson (of Appendix N Three Hearts and Three Lions fame) had a book about one of those (Tau Zero). I think Star Trek ships supposedly have magnetic collectors on the front of their nacelles. Conceptually (IIRC), it works. It's just no longer considered a likely path to interstellar travel because 1) the (general) interstellar medium is a lot less dense than initially predicted, and 2) fusing Hydrogen-1 (the bulk of what would be scooped up) is a lot harder than we thought it would be.
Yep. Fusing basic hydrogen is a pain. There have been various mathematical attempts to make it work since, but they certainly aren't practical at our technological levels.
But, you can handwave it pretty easily ("Look, a nebula! Dense, and enriched with deuterium and tritium!"). So, handwaving getting hydrogen from an even more dense source, like a gas giant atmosphere, really shouldn't be that bad.