Eyes of Nine
Everything's Fine
I think it's more independent in terms of not bowing to publicly traded corporate interests. I mean, ENWorld is basically Russ and his ragtag band of co-conspiratorsRPGGeek.com - interface ttakes a bit to get used to, but there's lots of discussion in the general areas.
No offense to En World's staff, who seem pretty good about not beating us over the heads with their own product, but given that the EN Publishing is linked to EN World, I don't think it qualifies as independently owned...