Dark Vision is a nice idea - in extreme moderation.
Outsiders and aberrations having it I can see, so to speak.
For all other creature types, however, it should be virtually unknown.
Exceptional fey, rare magical beasts, some undead - these I can understand having it. But most others should not have it.
As for Low Light Vision - give it to most animals and magical beasts, fey, perhaps giants, and some exceptional monstrous humanoids (but not all or even most monstrous humanoids). I can't see the point in giving it to most other creature types.
I've always been of the opinion that constructs and undead should have magical senses rather than enhanced non-magical ones.