2. Apply circumstantial bonuses and penalties. A
class feature, a spell, a particular circumstance, or some
other effect might give a bonus or penalty to the check.
3. Compare the total to a target number. [...][/INDENT]
Note item 2 - I colored the most important part...
A ___.
That means, at least to me,
A feature = 1 feature
A spell = 1 spell (but noting the exception in spellcasting rules)
A circumstance = 1 circumstance (but none have been given that modify rolls that I've seen)
some other effect = somthing else.
The implication of the "or" is that you're only supposed to get ONE of them.
By the literal text, in the most literal sense, you don't get to add multiples unless they're spells... So either you're adding the Con bonus OR you're adding the Spells' bonuses, but I suspect that may be a bit too literal.
I don't think this is the way English normally works. Consider the sentence before the highlighted bit, which uses plurals: "bonuses" and "penalties". That suggests that the indefinite article in the next sentence ("a") is being used as an indefinite article, and not as a substitute for the number one.
You add any bonuses and penalties that apply.