To compile and extend a bit:
Aboleth (MM)
Achaierai (MM)
Alaghi (MOF)
Alkilith (FF)
Anaxim abomination (ELH)
Arch Lurker (CC2)
Astral Constructs (PH)
Astral Dreadnaught (MOTP)
Automatons (MM2)
Avolakia (MM2)
Behir (MM)
Bladeling (MM2)
Blood Golem (FF)
Bloodbloater (FF)
Blue (PH)
Bodak (MM)
Bonespear (FF)
Bonesucker (TOH)
Brain Golem (FF)
Brain Mole (PH)
Bullette (MM)
Carrion Crawler (MM)
Chaos Beast (MM)
Chaos Globe (CC2)
Choker (MM)
Chuul (MM)
Chwidencha (FF)
Cloaker (MM, MOF)
Clockwork Horrors (MM2)
Cloudsting (CC2)
Colossus (??)
Cranium Rat (FF)
Darkling Sentinel (CC2)
Darkmantle (MM)
Darktentacle (MM2)
Darkweaver (FF)
Deepspawn (MOF)
Derro (MM)
Deryth (CC2)
Destrachan (MM)
Digester (MM)
Displacer Beast (MM)
Doppleganger plant (??)
Dune Delver (CCR)
Energon (MOTP)
Ether Scarab (MM2)
Ethereal Doppelganger (MM2)
Ethereal Filcher (MM)
Ethereal Marauder (MM)
Ethereal Ooze (FF)
Ethereal Slayer (MM2)
Ethergaunt (FF)
Flesh Golem (MM)
Flesh Jelly (MM2)
Flumph (TOH)
Folugub (PH)
Formian (MM, FF, especially the FF ones)
Gallows Eye (CC2)
Gelatinous Cube (MM)
Ghaunadan (MOF)
Gibbering Mouther (MM)
Gith (MM)
Greater Doppelganger (MOF)
Grell (MM2)
Grick (MM)
Half-Golem (various) (MM2)
Hobgoblin (MMRast (MM)
Hook Horror (MM2)
Howler (MM)
Inevitable (various, and especially the Kolyarut (MM) Kharut (FF) and Varakhut (FF))
Iron Cobra (FF)
Iron Golem (MM)
Keeper (FF)
Kopru (MM2)
Krenshar (MM)
Kython (BOVD)
Lucent Worm (FF)
Lurker Above (TOH)
Malaugrym (MOF)
Maug (FF)
Megapede (MM2)
Mercane (MOTP)
Modron (MOTP)
Moonbeast (MM2)
Mooncalf (MM2)
Morkoth (MM2)
Neogi (MM2)
Nerra (FF)
Nimblewright (MM2)
Nyth (MOF)
Ocean Strider (MM2)
Octopus Tree (FF)
Ormyrr (MM2)
Pestilite (CC2)
Phaerimm (MOF)
Phantom Fungus (MM)
Phase Mass (CC3)
Phase Wasp (MM2)
Psurlon (MM2)
Puppeteer (PH)
Purple Worm (MM)
Reason Stealer (MM2)
Rukanyr (FF)
Rukarazyll (MM2)
Rust Monster (MM)
Sharn (MOF)
Skybleeder (FF)
Slaad (MM, FF, ELH)
Slasrath (FF)
Spectral Lurker (FF)
Spellweaver (MM2)
Sporebat (FF)
Steel Predator (FF)
Symbionts (several of them, FF)
Tauric Creature (MM2)
Temporal Filcher (PH)
Teratomorph (MM2)
Thoqqua (MM)
Thought Eater (PH)
Thri-Kreen (MM2)
Thunder Orb (CCR)
Tirapheg (??)
Titanic Creature (MM2)
Tojanida (MM)
Trapper (
Tunnel Terror (FF)
Udoroot (PH)
Umber hulk (MM)
Umber Hulk (MM)
Vaath (BOVD)
Windghost (MM2)
Wyste (MM2)
Xill (MM)
Xorn (MM)
Yellow Musk Creeper (TOH, FF)
Yochlol (MOF)
Yrthak (MM)
Yuan-Ti (MM, FF)
Yugoloth (various, especially the Pisco-, Skero- (FF), Cano-, Ultro-, and Mezzoloth (MOTP))
Zaratan (A&EG)
Zodar (FF)
Notes :
Alaghis, of course, are also known as wookies.
Blues should be seen as a ET race rather than as a goblin anomaly.
Fiends should have their fiendish aspect removed to be sci-fi, most notably their spell-like abilities. They could be replaced by psionic powers, especially psikin and psiport.
Hobgoblins should be renamed Klingons
Psurlons likewise deserve to get their psionic powers back.
Tauric and Titanic Creatures are the result of pulp genetics technology (macromorphical ray, merging machine, whatever).