I picked this up recently and am enjoying it quite a bit. I like the move to Spycraft since Spycraft has all that keen investigative support, favor checks, and the budget points + resource/gadget points for further character differentiation. Unfortunately, I don't have a group currently so it's getting added to my growing list of full-fledged, 1st to 20th, campaigns I'd like to run.
One thing I'd like to see for Spycraft is a freelancers style supplement. My old group back home preferred not having a boss so it would be useful to have some in depth treatment of running a group that does work-for-hire for the existing agencies.