My problem with almost all of these character creation programs is none of them will do what I want. I've added races, feats, classes, spells, and equipment from a multitude of sources*. None of these allow me to easily add in this information. They guys at Code Monkey even told me that some of them are flat out impossible to do with the current software. So, that leaves me with the good old trust pencil and paper. They've worked for countless game systems over my 25 years of gaming, and they will continue to work in the future too.
* For the record, I am using races, equipment, and feats from Arcana Unearthed, Monte Cook's revised Ranger, a race from Throwing Dice Games, equipment from Dragon magazine, feats from Ronin Arts, and spells from the WotC website.