I'm amazed nobody has yet mentioned U1-2. The Saltmarsh modules were great.
The early parts of Return to the Tomb of Horrors take place in a swamp, and have some cool, evocative stuff going on (ghouls that lurk in the water under floating mats of peat, and burst up to try to drag the pcs down... good stuff!).
I should also mention the Age of Worms Adventure Path module, Encounter at Blackwall Keep (Dungeon #126). There aren't any ruins but there are some decent rules for swamp travel and dangers.