That was part of the complaint. The ongoing metaplot made it difficult for people to get into the games. Too many books, too many characters, just plain too much going on.
The stories are going to be completely different. For instance, with Vampire: the Requiem, we now have five clans. That's it. Also, instead of Camarilla and Sabbat, there are roughly five major organizations for vampires to belong to, all of which disagree on the origin of the vampiric curse (or whether it's even a curse at all). Most of the powers were revamped, the backhistory has been significantly changed, etc.
They're still bloodsucking monsters of the night, the Prince still holds authority in his city, and politics still plays a major part of the game. But the story is quite different.