I hate:
...Bards as a non-PrC.
...Bards that nolonger pick up wizard spells (using Int and spellbook), but instead somehow get magic simply by being pretty-boys.
...Color coded Dragons
...Dragons used as minor monsters
...Eberron; That DMG eyes only stuff is repeatedly printed alongside Player stuff (Kaius is a vampire? Huh, don't forget the holy water!).
...Eberron; Dwarves still get bonuses to fight Giants, but the Elves have the anti-giant backstory as well as an uber Giant-slayer PrC.
...Eberron; Shifters as a race rather than a Template. (other than that, great stuff Mr Hellcow!)
...Half-Elves as Standard PC Races
...Half-Orcs as Standard PC Races
...Point Buy under 32
...Sorcerers
...The very notion that D&D must be pseudo-western-europe, and ONLY that. "Sorry, this region has no room for voodoo, ninjas, or thri-kreen!"
...Vancian Magic
...Warmage edge wasn't a feat.
I dig (partial list):
...Dinosaurs
...Dragons as Forces of Nature
...Drow PCs (as long as they're Evil or otherwise are not Drizzt Clones. Don't get me wrong, I dig Drizzt... but there can be only one.

)
...Fey pc races (all too few)
...Gestalt
...Halflings (especially those that ride dinosaurs)
...Psionics (especially psionic halflings who ride dinosaurs!)
...Mindflayers, and the fact that they're commonly refered to as Mind Flayers.
...Undead
...Underdark monsters (Beholders, Darkmantles, Displacers beasts, Flayers, Ropers, etc)
...Warforged
...Warlocks
...Wealth Guidelines (keyword: guidelines)
...Weird PCs (templates and/or oddball races)