See 'Rules of the Game - Reading Spell Descriptions (part 2)' at:
http://www.wizards.com/default.asp?x=dnd/rg/20040803a
(my emphasis)
I know that there has been a lot of debate previously on the boards about this issue. While not Errata or FAQ, it still might help settle some debates.
(apologies if this is old news or no longer in debate)
http://www.wizards.com/default.asp?x=dnd/rg/20040803a
(my emphasis)
The silence spell description says that the spell provides protection against sonic effects. For all practical purposes, this means that a silence spell blocks line of effect for a sonic spell. The sonic spell's area cannot extend into the area that a silence spell's emanation fills, and neither can a sonic spell be cast through a silence spell's emanation to affect something on the other side.
I know that there has been a lot of debate previously on the boards about this issue. While not Errata or FAQ, it still might help settle some debates.
(apologies if this is old news or no longer in debate)