I just re-subscribed to Dungeon, and that's about the best feedback and highest form of praise I can ever give for the magazine. You guys are doing a great job.
The last few issues have been truly awesome. Too bad my group is too high level to run either Siege of the Spider Eaters (issue 137) or Urban Decay (issue 138), as both those adventures are exactly the kind we enjoy playing. I am planning to adapt parts if not all of The Weavers (issue 138) into my Freeport campaign.
The new adventure path is going to work beautifully with my campaign, as well. I just picked up a couple extra copies of issue 139 just so I can have back-up copies of the map -- I foresee them getting lots of wear. In my homebrew world, I've decided that Sasserine is the chief rival -- political and economic -- of Freeport, and the characters will probably spend a good deal of time in each city, whether we play through all the adventure path or just portions of it.
As a GM who runs a modified mini-campaign setting (Green Ronin's Freeport) in a homebrew world, I usually avoid any adventure designed for a specific setting, especially anything for FR (I equate FR with power creep) or any Eberron adventure that includes warforged (incidentally, it's not because I hate warforged, it's because in my setting warforged are extremely rare and limited to one small country's war machine). Even if it's a Greyhawk adventure, I file off the serial numbers and attach my own setting-specific proper names. More generic, less specific.
Do I mind seeing setting-specific material in the mag? No, I don't. But I don't begrudge FR fans and Eberron fans their space. I'd just rather see more generic stuff because that's the stuff I can use as-is. But I also don't honestly believe that DMs of FR and Eberron games should find too much trouble in taking a generic adventure and placing it in Aerenal or Karrnath, or the Forest of Amtar or Amn, (or Keoland or the Theocracy of the Pale, for that matter) or wherever, any more than I'd have trouble taking the same adventures and placing them in Firlindry or the League of the Sea Dragon or the Broken Crown Hills.